Gerhard J. Herndl

Major contribution of particle‐associated microbes to deep‐sea organic carbon degradation

The biological carbon pump mediates the export of particulate organic carbon from the euphotic zone to the deep ocean, where it provides the base of the food web. Although deep‐sea …

marilena-heitger

Microbial diagenesis of dissolved organic matter from the ocean’s surface to abyssal depths: a case study in the Humboldt upwelling system

Marine dissolved organic matter (DOM) represents one of Earth’s largest dynamic carbon pools—comparable in scale to atmospheric CO₂. Primarily derived from phytoplankton production …

anja-engel

Comparison of picolyl azide-based BONCAT and microautoradiography for assessing the heterotrophic prokaryotic activity in the deep ocean

Prokaryotes play a central role in marine biogeochemical cycles, yet quantifying their activity requires sensitive methods due to low biomass and metabolic rates, particularly in …

avatar
Chie Amano

Metaproteomic analysis decodes trophic interactions of microorganisms in the dark ocean

Proteins in the open ocean represent a significant source of organic matter, and their profiles reflect the metabolic activities of marine microorganisms. Here, by analyzing …

zihao-zhao

Substrate uptake patterns shape niche separation in marine prokaryotic microbiome

Marine heterotrophic prokaryotes primarily take up ambient substrates using transporters. The patterns of transporters targeting particular substrates shape the ecological role of …

zihao-zhao

Bacterial degradation of ctenophore Mnemiopsis leidyi organic matter

Jellyfish blooms are increasingly becoming a recurring seasonal event in marine ecosystems, characterized by a rapid build-up of gelatinous biomass that collapses rapidly. Although …

eduard-fadeev

A device for assessing microbial activity under ambient hydrostatic pressure: The in situ microbial incubator (ISMI)

Microbes in the dark ocean are exposed to hydrostatic pressure increasing with depth. Activity rate measurements and biomass production of dark ocean microbes are, however, almost …

avatar
Chie Amano

Limited carbon cycling due to high-pressure effects on the deep-sea microbiome

Deep-sea microbial communities are exposed to high-pressure conditions, which has a variable impact on prokaryotes depending on whether they are piezophilic (that is, …

avatar
Chie Amano

Impact of hydrostatic pressure on organic carbon cycling of the deep-sea microbiome

Deep-sea microbial communities are exposed to high hydrostatic pressure. While some of these deep-sea prokaryotes are adapted to high-pressure conditions, the contribution of …

avatar
Chie Amano